Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 9 curated entries in PaperBLAST's database that match '1.1.2.3'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_1250: L-lactate dehydrogenase (cytochrome)
is similar to:
PaperBLAST

Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp.

59% id,
97% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

55% id,
99% cov

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

46% id,
99% cov

More...

N515DRAFT_2675: IMP dehydrogenase
is similar to:
PaperBLAST

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

31% id,
26% cov

N515DRAFT_2933: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp.

41% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory