Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0361: homogentisate 1,2-dioxygenase
is similar to:
PaperBLAST

RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis

71% id,
95% cov

HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida
Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida

62% id,
97% cov

HGD_PSEPU / Q6EMI9: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida

61% id,
97% cov

More...

N515DRAFT_0357: tryptophan 2,3-dioxygenase
is similar to:
PaperBLAST

Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris

71% id,
94% cov

P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster

40% id,
45% cov

P48776: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Mus musculus

40% id,
36% cov

More...

N515DRAFT_2928: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
is similar to:
PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

53% id,
99% cov

MTND_BACSU / O31669: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Bacillus subtilis

33% id,
100% cov

Q0WSS4: acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Arabidopsis thaliana

26% id,
78% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory