Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 43 curated entries in PaperBLAST's database that match '1.3.3.6'.

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0484: glutaryl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

35% id,
88% cov

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

27% id,
36% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

27% id,
36% cov

More...

N515DRAFT_0492: hypothetical protein
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

31% id,
85% cov

ACO12_ARATH / Q9ZQP2: Putative peroxisomal acyl-coenzyme A oxidase 1.2; EC 1.3.3.6 from Arabidopsis thaliana
Q9ZQP2: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
34% cov

N515DRAFT_0941: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
84% cov

N515DRAFT_4351: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
72% cov

N515DRAFT_3696: nitronate monooxygenase
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

29% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

287241-288452 (frame -1) on N515DRAFT_scaffold00001.1
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Also see hits to annotated proteins above

28% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory