Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_2155: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

63% id,
99% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

43% id,
92% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

42% id,
90% cov

More...

N515DRAFT_0055: glycine dehydrogenase
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

60% id,
100% cov

P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

54% id,
94% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

54% id,
93% cov

More...

N515DRAFT_4331: aminomethyltransferase
is similar to:
PaperBLAST

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

59% id,
99% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

51% id,
99% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

43% id,
98% cov

More...

N515DRAFT_4332: glycine cleavage system H protein
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

58% id,
100% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

47% id,
98% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

57% id,
75% cov

More...

N515DRAFT_0947: leucine dehydrogenase
is similar to:
PaperBLAST

DHPH_CALTT / F5L9G2: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Caldalkalibacillus thermarum

46% id,
99% cov

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

49% id,
93% cov

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

49% id,
93% cov

More...

N515DRAFT_2778: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

49% id,
93% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

49% id,
92% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

47% id,
90% cov

More...

N515DRAFT_0489: glutamate dehydrogenase
is similar to:
PaperBLAST

A0A0H3C571: glutamate dehydrogenase (EC 1.4.1.2) from Caulobacter vibrioides

43% id,
98% cov

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

53% id,
60% cov

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

50% id,
59% cov

More...

N515DRAFT_2310: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

31% id,
98% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
94% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

28% id,
88% cov

More...

N515DRAFT_3724: NADPH-glutathione reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
97% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

29% id,
95% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

28% id,
90% cov

More...

N515DRAFT_2156: pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
is similar to:
PaperBLAST

Q9LQL0: glycine cleavage system (subunit 2/5) (EC 1.4.1.27) from Arabidopsis thaliana

31% id,
58% cov

N515DRAFT_0017: alkyl hydroperoxide reductase subunit F
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

26% id,
63% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

27% id,
38% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

26% id,
38% cov

N515DRAFT_0958: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

30% id,
22% cov

N515DRAFT_2709: 2,4-dienoyl-CoA reductase (NADPH2)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
19% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

24% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

136057-141048 (frame -1) on N515DRAFT_scaffold00012.12
is similar to:
PaperBLAST

A0A0H3C571: glutamate dehydrogenase (EC 1.4.1.2) from Caulobacter vibrioides
Also see hits to annotated proteins above

42% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory