Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 24 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0055: glycine dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

66% id,
99% cov

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

66% id,
99% cov

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

66% id,
99% cov

More...

N515DRAFT_4332: glycine cleavage system H protein
is similar to:
PaperBLAST

P25855: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

47% id,
78% cov

P23434: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

46% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

83691-84137 (frame +3) on N515DRAFT_scaffold00009.9
is similar to:
PaperBLAST

P25855: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana
Also see hits to annotated proteins above

44% id,
86% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory