Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 48 curated entries in PaperBLAST's database that match '1.5.5.2'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_4232: L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

55% id,
97% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

54% id,
98% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

54% id,
98% cov

More...

N515DRAFT_0956: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

29% id,
76% cov

N515DRAFT_2697: gamma-glutamylputrescine oxidase
is similar to:
PaperBLAST

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
92% cov

Q5JFG2: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

23% id,
92% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

21% id,
60% cov

N515DRAFT_0017: alkyl hydroperoxide reductase subunit F
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

28% id,
75% cov

N515DRAFT_2778: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
72% cov

N515DRAFT_3723: D-amino-acid dehydrogenase
is similar to:
PaperBLAST

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
82% cov

Q5JFG2: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

22% id,
82% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

36% id,
13% cov

More...

N515DRAFT_3286: thioredoxin reductase (NADPH)
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
65% cov

N515DRAFT_3729: aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

33% id,
42% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

33% id,
42% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

32% id,
41% cov

More...

N515DRAFT_0379: Acyl-CoA reductase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
44% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

29% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

29% id,
42% cov

More...

N515DRAFT_0465: aldehyde dehydrogenase (NAD+)
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
46% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

27% id,
43% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
43% cov

More...

N515DRAFT_2488: succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
43% cov

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

28% id,
36% cov

HSERO_RS00905: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Herbaspirillum seropedicae

28% id,
35% cov

More...

N515DRAFT_0954: NADP-dependent aldehyde dehydrogenase
is similar to:
PaperBLAST

RR42_RS20125: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Cupriavidus basilensis

29% id,
36% cov

N515DRAFT_4224: coniferyl-aldehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
39% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

26% id,
40% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

26% id,
39% cov

More...

N515DRAFT_2874: kynurenine 3-monooxygenase
is similar to:
PaperBLAST

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

43% id,
13% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

41% id,
13% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

39% id,
13% cov

N515DRAFT_0957: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

33% id,
16% cov

N515DRAFT_2159: hypothetical protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

49% id,
10% cov

N515DRAFT_0533: tRNA uridine 5-carboxymethylaminomethyl modification enzyme
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

34% id,
12% cov

N515DRAFT_2155: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

35% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory