Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0938: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

Mpe_A3367 / A2SL81: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Methylibium petroleiphilum

62% id,
99% cov

SO1677: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) from Shewanella oneidensis

62% id,
98% cov

Ac3H11_2994: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Acidovorax sp.

61% id,
98% cov

More...

N515DRAFT_2688: acetyl-CoA acyltransferase
is similar to:
PaperBLAST

FADA_BACSU / O32177: 3-ketoacyl-CoA thiolase; Acetyl-CoA acyltransferase; Beta-ketothiolase; EC 2.3.1.16 from Bacillus subtilis

50% id,
99% cov

Shewana3_0023: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella sp.

46% id,
100% cov

Sama_0031: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella amazonensis

46% id,
100% cov

More...

N515DRAFT_3009: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

FADI_ECOLI / P76503: 3-ketoacyl-CoA thiolase FadI; ACSs; Acetyl-CoA acyltransferase; Acyl-CoA ligase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta; EC 2.3.1.16 from Escherichia coli
FadI / b2342: 3-ketoacyl-CoA thiolase FadI (EC 2.3.1.16) from Escherichia coli
fadI / P76503: 3-ketoacyl-CoA thiolase FadI (EC 2.3.1.16) from Escherichia coli
fadI / A0A140N9I7: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

38% id,
97% cov

fadA / Q5P5K2: 3-keto-acyl-CoA-thiolase (EC 2.3.1.16) from Aromatoleum aromaticum

37% id,
99% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

35% id,
98% cov

More...

N515DRAFT_0416: 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
92% cov

N515DRAFT_1164: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

33% id,
34% cov

N515DRAFT_4114: 3-oxoacyl-[acyl-carrier-protein] synthase-1
is similar to:
PaperBLAST

FADA_ECOLI / P21151: 3-ketoacyl-CoA thiolase FadA; Acetyl-CoA acyltransferase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta; EC 2.3.1.16 from Escherichia coli
OldA / b3845: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli
fadA / P21151: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli
P21151: acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Escherichia coli

37% id,
12% cov

fadA / A0A140NDQ6: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

37% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

516571-517428 (frame -3) on N515DRAFT_scaffold00001.1
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

34% id,
35% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory