Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 65 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0396: 5'-methylthioadenosine phosphorylase
is similar to:
PaperBLAST

MTIP_PSEAE / Q9HZK1: S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa
PA3004 / Q9HZK1: S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa
Q9HZK1: S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa

53% id,
98% cov

N515DRAFT_2462: thymidine phosphorylase
is similar to:
PaperBLAST

Q99N42: thymidine phosphorylase (EC 2.4.2.4) from Mus musculus

29% id,
91% cov

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

28% id,
85% cov

P75052: thymidine phosphorylase (EC 2.4.2.4) from Mycoplasma pneumoniae

23% id,
95% cov

N515DRAFT_3601: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

Q8THU2: tRNA-guanosine34 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

30% id,
67% cov

ATGT_PYRHO / O58843: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Pyrococcus horikoshii
O58843: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Pyrococcus horikoshii

27% id,
57% cov

ATGT_METJA / Q57878: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Methanocaldococcus jannaschii
tgtA / Q57878: 7-cyano-7-deazaguanine tRNA-ribosyltransferase monomer (EC 2.4.2.48) from Methanocaldococcus jannaschii
Q57878: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanocaldococcus jannaschii

29% id,
51% cov

More...

N515DRAFT_4042: 4-amino-4-deoxy-L-arabinose transferase
is similar to:
PaperBLAST

ARNT_SALTY / O52327: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Salmonella typhimurium
O52327: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Salmonella enterica

27% id,
71% cov

AAL34393.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT) (EC 2.4.2.43) from

27% id,
71% cov

ARNT_ECOLI / P76473: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Escherichia coli
YfbI / b2257: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Escherichia coli
AAC75317.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT;PmrK;b2257) (EC 2.4.2.43) from
BAE76674.1: 4-amino-4-deoxy-L-arabinose transferase (ArnT) (EC 2.4.2.43) from
arnT / P76473: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Escherichia coli
P76473: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Escherichia coli

27% id,
59% cov

N515DRAFT_4036: 4-amino-4-deoxy-L-arabinose transferase
is similar to:
PaperBLAST

ARNT_ECOLI / P76473: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Escherichia coli
YfbI / b2257: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Escherichia coli
AAC75317.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT;PmrK;b2257) (EC 2.4.2.43) from
BAE76674.1: 4-amino-4-deoxy-L-arabinose transferase (ArnT) (EC 2.4.2.43) from
arnT / P76473: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Escherichia coli
P76473: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Escherichia coli

30% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

226265-227539 (frame -3) on N515DRAFT_scaffold00007.7
is similar to:
PaperBLAST

GXLT2_HUMAN / A0PJZ3: Glucoside xylosyltransferase 2; Glycosyltransferase 8 domain-containing protein 4; EC 2.4.2.42 from Homo sapiens

41% id,
17% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory