Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_3101: ribokinase
is similar to:
PaperBLAST

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

46% id,
97% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

45% id,
99% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

45% id,
97% cov

More...

N515DRAFT_3220: ribokinase
is similar to:
PaperBLAST

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

43% id,
94% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

41% id,
99% cov

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

40% id,
99% cov

More...

N515DRAFT_0916: Sugar or nucleoside kinase, ribokinase family
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

30% id,
99% cov

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

31% id,
94% cov

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

29% id,
99% cov

More...

N515DRAFT_1919: fructokinase
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

28% id,
99% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
99% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

26% id,
100% cov

More...

N515DRAFT_2221: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

32% id,
84% cov

Q8NQR0: ribokinase (EC 2.7.1.15) from Corynebacterium glutamicum

30% id,
90% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

30% id,
89% cov

More...

N515DRAFT_0917: tagatose 6-phosphate kinase
is similar to:
PaperBLAST

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

25% id,
91% cov

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

23% id,
86% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

29% id,
40% cov

More...

N515DRAFT_2099: ribose-5-phosphate isomerase
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

34% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

293378-294949 (frame +2) on N515DRAFT_scaffold00004.4
is similar to:
PaperBLAST

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

42% id,
96% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans
Also see hits to annotated proteins above

33% id,
97% cov

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
Also see hits to annotated proteins above

34% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory