Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 319 curated entries in PaperBLAST's database that match '3.2.1.23'.

These curated entries have 250 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_3226: Beta-galactosidase GanA
is similar to:
PaperBLAST

ABA39423.1: β-galactosidase (GalD) (EC 3.2.1.23)

60% id,
89% cov

AAP86763.1: β-galactosidase (Gal35I;GalC) (EC 3.2.1.23)

31% id,
35% cov

BGAL_XANMN / P48982: Beta-galactosidase; Lactase; EC 3.2.1.23 from Xanthomonas manihotis
AAC41485.1: β-galactosidase (BGA;BgaX) (EC 3.2.1.23)

31% id,
33% cov

More...

N515DRAFT_4211: beta-glucosidase
is similar to:
PaperBLAST

ABI35984.1: β-glycosidase (β-gly) (EC 3.2.1.21|3.2.1.23)

47% id,
98% cov

ACL74759.1: cellodextrin glucohydrolase (Ccel_0374) (EC 3.2.1.21|3.2.1.23|3.2.1.74)

40% id,
99% cov

AEQ38581.1: β-galactosidase (Mbgl) (EC 3.2.1.23)

37% id,
97% cov

More...

N515DRAFT_0922: beta-galactosidase
is similar to:
PaperBLAST

CAZ44333.1: β-galactosidase; β-D-fucosidase (GalF) (EC 3.2.1.23|3.2.1.38)

39% id,
97% cov

BGAL_XANMN / P48982: Beta-galactosidase; Lactase; EC 3.2.1.23 from Xanthomonas manihotis
AAC41485.1: β-galactosidase (BGA;BgaX) (EC 3.2.1.23)

37% id,
96% cov

AAM42167.1: β-galactosidase (Bga;NixL;XCC2895) (EC 3.2.1.23)

36% id,
98% cov

More...

N515DRAFT_2387: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

ABW87309.1: β-galactosidase (β-gal;BgaA) (EC 3.2.1.23)

34% id,
98% cov

ACJ51396.1: β-galactosidase (Blon_0268) (EC 3.2.1.23)

30% id,
88% cov

N515DRAFT_3019: beta-glucosidase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

34% id,
86% cov

N515DRAFT_3995: beta-glucosidase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

31% id,
59% cov

N515DRAFT_2145: hypothetical protein
is similar to:
PaperBLAST

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC 3.2.1.23)

33% id,
42% cov

N515DRAFT_1246: Alpha-glucosidases, family 31 of glycosyl hydrolases
is similar to:
PaperBLAST

ABW87309.1: β-galactosidase (β-gal;BgaA) (EC 3.2.1.23)

29% id,
20% cov

N515DRAFT_2419: Ig-like domain (group 4)
is similar to:
PaperBLAST

BAJ61032.1: β-galactosidase A / B / C / D / 91 (Bga;BgaD;β-Gal-A;β-Gal-B;β-Gal-C;β-Gal-D;β-Glα-91) (EC 3.2.1.23)

23% id,
14% cov

AAK74795.1: β-1,4-galactosidase A (BgaA;SP0648;SP_0648) (EC 3.2.1.23)
AAF97242.1: β-galactosidase (BgaA) (EC 3.2.1.23)

25% id,
9% cov

AAK99369.1: β-galactosidase (BgaA;spr0565) (EC 3.2.1.23)
ABJ53768.1: β-galactosidase (BgaA;SPD0562;SPD_0562) (EC 3.2.1.23)

25% id,
9% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

53012-57445 (frame +2) on N515DRAFT_scaffold00003.3
is similar to:
PaperBLAST

BAJ61032.1: β-galactosidase A / B / C / D / 91 (Bga;BgaD;β-Gal-A;β-Gal-B;β-Gal-C;β-Gal-D;β-Glα-91) (EC 3.2.1.23)
Also see hits to annotated proteins above

29% id,
8% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory