Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_4002: aspartate kinase
is similar to:
PaperBLAST

C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata

28% id,
80% cov

Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum

39% id,
11% cov

N515DRAFT_2124: diaminopimelate decarboxylase
is similar to:
PaperBLAST

P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus

27% id,
81% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

27% id,
82% cov

DCOR_HUMAN / P11926: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens
ODC1 / P11926: ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens

28% id,
75% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory