Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_4002: aspartate kinase is similar to:	PaperBLAST
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	100% id, 100% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	39% id, 93% cov
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli	35% id, 91% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	35% id, 88% cov
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis	34% id, 91% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	33% id, 91% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	32% id, 94% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	32% id, 85% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	29% id, 91% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	29% id, 91% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	29% id, 91% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	33% id, 78% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	32% id, 76% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	32% id, 75% cov
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N515DRAFT_2124: diaminopimelate decarboxylase is similar to:	PaperBLAST
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	47% id, 94% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	46% id, 96% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	46% id, 94% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	45% id, 95% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	42% id, 94% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	39% id, 98% cov
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli	36% id, 100% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	37% id, 95% cov
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis	35% id, 97% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	34% id, 95% cov
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	33% id, 98% cov
DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis	33% id, 94% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	31% id, 93% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	34% id, 81% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	34% id, 82% cov
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	37% id, 43% cov
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N515DRAFT_3000: arginine decarboxylase is similar to:	PaperBLAST
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	28% id, 68% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	23% id, 76% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	26% id, 63% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	26% id, 58% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	24% id, 58% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory