Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 63 curated entries in PaperBLAST's database that match '4.1.2.5'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_4091: 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase
is similar to:
PaperBLAST

QUED_ECOLI / P65870: 6-carboxy-5,6,7,8-tetrahydropterin synthase; CPH4 synthase; Queuosine biosynthesis protein QueD; EC 4.1.2.50 from Escherichia coli
SscR / b2765: 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) from Escherichia coli
queD / P65870: 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) from Escherichia coli
P65870: 6-carboxytetrahydropterin synthase (EC 4.1.2.50) from Escherichia coli

64% id,
92% cov

DHNPA_PYRFU / E7FHF1: Dihydroneopterin monophosphate aldolase; H2NMP aldolase; 7,8-dihydroneopterin monophosphate aldolase; EC 4.1.2.59 from Pyrococcus furiosus
PF1278 / E7FHF1: dihydroneopterin phosphate aldolase (EC 4.1.2.59) from Pyrococcus furiosus
E7FHF1: dihydroneopterin phosphate aldolase (EC 4.1.2.59) from Pyrococcus furiosus

45% id,
61% cov

QUED_BACSU / O31676: 6-carboxy-5,6,7,8-tetrahydropterin synthase; CPH4 synthase; Queuosine biosynthesis protein QueD; EC 4.1.2.50 from Bacillus subtilis
queD / O31676: 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) from Bacillus subtilis

33% id,
79% cov

N515DRAFT_4398: L-threonine aldolase
is similar to:
PaperBLAST

LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
itaE / GB|BAA20882.1: threonine aldolase; EC 4.1.2.5 from Escherichia coli

56% id,
99% cov

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

46% id,
99% cov

GLY1 / GB|AAA72430.1: threonine aldolase; EC 4.1.2.5 from Saccharomyces cerevisiae

40% id,
87% cov

N515DRAFT_3178: 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase
is similar to:
PaperBLAST

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC 4.1.2.55) from Dickeya dadantii

52% id,
98% cov

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli

52% id,
96% cov

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16; EC 4.1.2.55) from Thermotoga maritima

29% id,
98% cov

More...

N515DRAFT_1232: 2-keto-3-deoxy-phosphogalactonate aldolase (EC 4.1.2.21)
is similar to:
PaperBLAST

YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55; EC 4.1.2.21) from Escherichia coli
dgoA / Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55) from Escherichia coli

50% id,
98% cov

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16; EC 4.1.2.55) from Thermotoga maritima

33% id,
93% cov

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli

30% id,
82% cov

More...

N515DRAFT_1147: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli
YagE / b0268: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli
yagE / P75682: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli

31% id,
96% cov

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus
Q6KZI8: 2-dehydro-3-deoxy-D-gluconate aldolase (EC 4.1.2.51) from Picrophilus torridus

24% id,
88% cov

LGA1_ASPNG / A8DRH7: L-threo-3-deoxy-hexylosonate aldolase; L-threo-3-deoxy-hexulosonate aldolase; EC 4.1.2.54 from Aspergillus niger
A8DRH7: L-threo-3-deoxy-hexylosonate aldolase (EC 4.1.2.54) from Aspergillus niger

30% id,
52% cov

N515DRAFT_0955: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli
YagE / b0268: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli
yagE / P75682: CP4-6 prophage; putative 2-dehydro-3-deoxygluconate aldolase (EC 4.1.2.28; EC 4.1.2.51) from Escherichia coli

29% id,
98% cov

LGA1_HYPJE / A6Y9S5: L-threo-3-deoxy-hexylosonate aldolase; L-threo-3-deoxy-hexulosonate aldolase; EC 4.1.2.54 from Hypocrea jecorina
LGA1 / A6Y9S5: 2-keto-3-deoxy-L-fuconate aldolase (EC 4.1.2.64; EC 4.1.2.54) from Hypocrea jecorina
A6Y9S5: L-threo-3-deoxy-hexylosonate aldolase (EC 4.1.2.54) from Trichoderma reesei

27% id,
99% cov

LRA4 / A3LZU9: 2-keto-3-deoxy-L-rhamnoate aldolase (EC 4.1.2.53) from Scheffersomyces stipitis

29% id,
88% cov

More...

N515DRAFT_2292: 4-hydroxy-2-oxoheptanedioate aldolase
is similar to:
PaperBLAST

RHMA_ECOLI / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase; KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase; 2-keto-3-deoxy acid sugar aldolase; EC 4.1.2.53 from Escherichia coli
YfaU / b2245: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli
yfaU / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli
P76469: 2-keto-3-deoxy-L-rhamnonate aldolase (EC 4.1.2.53) from Escherichia coli

31% id,
90% cov

HPCH_ECOLX / Q47098: 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; HHED aldolase; 4-hydroxy-2-ketoheptane-1,7-dioate aldolase; HKHD aldolase; EC 4.1.2.52 from Escherichia coli
B1IS70: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52) from Escherichia coli
Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

30% id,
91% cov

KDSGA_PSEPU / P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase; 2-keto-3,6-dideoxy-6-sulfogluconate aldolase; KDSG aldolase; EC 4.1.2.58 from Pseudomonas putida
P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase (EC 4.1.2.58) from Pseudomonas putida

34% id,
73% cov

N515DRAFT_0914: fructose-bisphosphate aldolase, class I
is similar to:
PaperBLAST

ptmB1 / D8L2V7: 2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate synthase (EC 4.1.2.56) from Streptomyces platensis

29% id,
91% cov

creI / A0A0K2JKT6: 2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate synthase (EC 4.1.2.56) from Streptomyces cremeus

29% id,
82% cov

N515DRAFT_1846: L-threonine aldolase
is similar to:
PaperBLAST

LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
itaE / GB|BAA20882.1: threonine aldolase; EC 4.1.2.5 from Escherichia coli

26% id,
95% cov

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

28% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory