Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_4123: isocitrate lyase is similar to:	PaperBLAST
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	72% id, 97% cov
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	70% id, 99% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	69% id, 100% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	69% id, 100% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	68% id, 100% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	71% id, 95% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	68% id, 98% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	69% id, 96% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	67% id, 98% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	65% id, 98% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	63% id, 99% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	61% id, 95% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	62% id, 43% cov
A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii	25% id, 87% cov
ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii	24% id, 90% cov
Psest_2014: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri	28% id, 72% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	36% id, 56% cov
Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa	27% id, 73% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	37% id, 53% cov
ACEA_HYPME / O50078: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum	30% id, 61% cov
Q9P8Q7: isocitrate lyase (EC 4.1.3.1) from Candida albicans	39% id, 46% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	39% id, 45% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	38% id, 46% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	38% id, 45% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	37% id, 46% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	38% id, 45% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	38% id, 45% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	34% id, 49% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	39% id, 43% cov
ACEA_BRANA / P25248: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus	39% id, 43% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	39% id, 43% cov
Q9P8Q7: isocitrate lyase (EC 4.1.3.1) from Candida albicans	29% id, 58% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	36% id, 46% cov
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	37% id, 43% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	45% id, 33% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	42% id, 36% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	31% id, 47% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	44% id, 33% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	35% id, 41% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	41% id, 35% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	38% id, 37% cov
ACEA_BRANA / P25248: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus	42% id, 33% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	42% id, 33% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	37% id, 36% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	33% id, 39% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	39% id, 32% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	37% id, 33% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	31% id, 19% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	31% id, 19% cov
More...

N515DRAFT_0020: methylisocitrate lyase is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	36% id, 84% cov

N515DRAFT_4124: malate synthase is similar to:	PaperBLAST
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	53% id, 54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

23785-25611 (frame +1) on N515DRAFT_scaffold00010.10 is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus Also see hits to annotated proteins above	34% id, 92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory