Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 62 curated entries in PaperBLAST's database that match '4.2.1.17' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_2687: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q0KEG0: 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

58% id,
100% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

29% id,
77% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

27% id,
79% cov

More...

N515DRAFT_1164: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

45% id,
98% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

42% id,
100% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

42% id,
100% cov

More...

N515DRAFT_0930: methylglutaconyl-CoA hydratase
is similar to:
PaperBLAST

H16_A3593 / Q0K5S0: enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

37% id,
97% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

37% id,
99% cov

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

35% id,
97% cov

More...

N515DRAFT_0416: 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase
is similar to:
PaperBLAST

FADJ_ECOLI / P77399: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 1.1.1.35 from Escherichia coli
FadJ / b2341: 3-hydroxyacyl-CoA dehydrogenase FadJ (EC 1.1.1.35; EC 1.1.1.211; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8) from Escherichia coli
fadJ / RF|NP_416843: fatty acid oxidation complex subunit alpha; EC 1.1.1.35; EC 4.2.1.17; EC 5.1.2.3 from Escherichia coli
fadJ / P77399: multifunctional 3-hydroxyacyl-CoA dehydrogenase/3-hydroxyacyl-CoA epimerase/enoyl-CoA hydratase FadJ (EC 1.1.1.35; EC 4.2.1.17; EC 4.2.1.74; EC 5.1.2.3; EC 5.3.3.8) from Escherichia coli

37% id,
95% cov

fadB / Q88L02: FadB (EC 5.3.3.8; EC 1.1.1.35; EC 5.1.2.3; EC 4.2.1.17; EC 1.1.1.36) from Pseudomonas putida

37% id,
93% cov

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

36% id,
95% cov

More...

N515DRAFT_1169: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

ECH17_MYCBO / Q7TXE1: Probable enoyl-CoA hydratase EchA17; EC 4.2.1.17 from Mycobacterium bovis
ECH17_MYCTU / P9WNN3: Probable enoyl-CoA hydratase EchA17; EC 4.2.1.17 from Mycobacterium tuberculosis

32% id,
83% cov

FER4_USTMA / Q4PEN0: Enoyl-CoA isomerase/hydratase fer4; Fe-regulated protein 4; Ferrichrome A biosynthesis protein fer4; EC 4.2.1.17 from Ustilago maydis

28% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

520094-521488 (frame -2) on N515DRAFT_scaffold00001.1
is similar to:
PaperBLAST

ECH17_MYCBO / Q7TXE1: Probable enoyl-CoA hydratase EchA17; EC 4.2.1.17 from Mycobacterium bovis
ECH17_MYCTU / P9WNN3: Probable enoyl-CoA hydratase EchA17; EC 4.2.1.17 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

32% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory