Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_4305: cystathionine gamma-lyase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

51% id,
97% cov

N515DRAFT_2767: cysteine synthase A
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

40% id,
99% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

38% id,
99% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

39% id,
65% cov

More...

N515DRAFT_4363: cystathionine gamma-synthase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

42% id,
93% cov

N515DRAFT_4297: cystathionine beta-synthase (EC 4.2.1.22)
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

39% id,
99% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

38% id,
98% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

38% id,
99% cov

More...

N515DRAFT_2460: Predicted signal-transduction protein containing cAMP-binding and CBS domains
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

30% id,
94% cov

N515DRAFT_2478: Predicted signal-transduction protein containing cAMP-binding and CBS domains
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

34% id,
64% cov

N515DRAFT_4339: Predicted signal-transduction protein containing cAMP-binding and CBS domains
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

31% id,
57% cov

N515DRAFT_0565: threonine dehydratase
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

28% id,
59% cov

Q9VRD9: cystathionine beta-synthase (EC 4.2.1.22) from Drosophila melanogaster

27% id,
28% cov

N515DRAFT_0537: threonine dehydratase
is similar to:
PaperBLAST

CBS_APIME / Q2V0C9: Cystathionine beta-synthase; EC 4.2.1.22 from Apis mellifera
Q2V0C9: cystathionine beta-synthase (EC 4.2.1.22) from Apis mellifera

26% id,
58% cov

CBS / A0A563XPB1: cystathionine β-synthase (EC 4.2.1.22) from Gallus gallus

26% id,
55% cov

CBS_HUMAN / P35520: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Homo sapiens
CBS / P35520: cystathionine β-synthase monomer (EC 4.2.1.22) from Homo sapiens
P35520: cystathionine beta-synthase (EC 4.2.1.22) from Homo sapiens

25% id,
52% cov

More...

N515DRAFT_3206: threonine dehydratase
is similar to:
PaperBLAST

CBS_APIME / Q2V0C9: Cystathionine beta-synthase; EC 4.2.1.22 from Apis mellifera
Q2V0C9: cystathionine beta-synthase (EC 4.2.1.22) from Apis mellifera

25% id,
55% cov

CBS / A0A563XPB1: cystathionine β-synthase (EC 4.2.1.22) from Gallus gallus

28% id,
41% cov

Q9VRD9: cystathionine beta-synthase (EC 4.2.1.22) from Drosophila melanogaster

28% id,
41% cov

More...

N515DRAFT_0115: tryptophan synthase beta chain
is similar to:
PaperBLAST

CBS2_CAEEL / Q9N4K2: Putative cystathionine beta-synthase cbs-2; EC 4.2.1.22 from Caenorhabditis elegans

26% id,
40% cov

CBS1_CAEEL / G5EFH8: Cystathionine beta-synthase cbs-1; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Caenorhabditis elegans

31% id,
17% cov

N515DRAFT_2675: IMP dehydrogenase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

37% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

357926-359488 (frame -1) on N515DRAFT_scaffold00003.3
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus
Also see hits to annotated proteins above

27% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory