Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 160 curated entries in PaperBLAST's database that match '4.2.1.3'.

These curated entries have 117 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0029: aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming)
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

87% id,
100% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

82% id,
99% cov

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

47% id,
98% cov

More...

N515DRAFT_4003: fumarase, class I, homodimeric
is similar to:
PaperBLAST

Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans

77% id,
98% cov

P0AC33: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli

33% id,
92% cov

P14407: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli

30% id,
91% cov

More...

N515DRAFT_1420: aconitase
is similar to:
PaperBLAST

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

73% id,
99% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

72% id,
99% cov

acnB / P56418: aconitase (EC 4.2.1.3) from Helicobacter pylori

60% id,
100% cov

More...

N515DRAFT_1419: aconitate hydratase
is similar to:
PaperBLAST

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens

62% id,
99% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

60% id,
100% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

60% id,
99% cov

More...

N515DRAFT_0031: 2-methylcitrate dehydratase (EC 4.2.1.79)
is similar to:
PaperBLAST

PRPD_SALTY / P74840: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Salmonella typhimurium

61% id,
100% cov

PRPD_CUPNE / Q937N6: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Cupriavidus necator

60% id,
100% cov

PRPD_ECOLI / P77243: 2-methylcitrate dehydratase; 2-MC dehydratase; (2S,3S)-2-methylcitrate dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Escherichia coli

60% id,
98% cov

More...

N515DRAFT_0572: 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
is similar to:
PaperBLAST

P9WQF5: 3-isopropylmalate dehydratase (EC 4.2.1.33) from Mycobacterium tuberculosis

58% id,
98% cov

LEUC_MYCBO / Q7TXH6: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

58% id,
98% cov

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / ECOCYC|LEUC-MONOMER: 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

56% id,
99% cov

More...

N515DRAFT_0571: 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
is similar to:
PaperBLAST

LEUD_RHIL3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium leguminosarum

50% id,
95% cov

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

47% id,
93% cov

LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

46% id,
93% cov

More...

N515DRAFT_2409: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides

42% id,
97% cov

N515DRAFT_1231: galactonate dehydratase
is similar to:
PaperBLAST

G4RJQ1: gluconate dehydratase (EC 4.2.1.39) from Thermoproteus tenax

35% id,
93% cov

DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens

31% id,
100% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus

34% id,
87% cov

More...

N515DRAFT_0569: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides

30% id,
92% cov

N515DRAFT_0574: 2-isopropylmalate synthase
is similar to:
PaperBLAST

DVU1914: isopropylmalate/citramalate isomerase small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

28% id,
96% cov

N515DRAFT_3177: 6-phosphogluconate dehydratase
is similar to:
PaperBLAST

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides

29% id,
90% cov

N515DRAFT_1251: L-fuconate dehydratase
is similar to:
PaperBLAST

DMGD_DICP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Dickeya paradisiaca

25% id,
92% cov

DGD_PANAM / D4GJ14: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39 from Pantoea ananatis

24% id,
94% cov

DGD_SALVI / B5QBD4: D-galactonate dehydratase family member SeV_A0456; D-gluconate dehydratase; EC 4.2.1.-; EC 4.2.1.39 from Salmonella virchow

24% id,
64% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

215979-217601 (frame -2) on N515DRAFT_scaffold00007.7
is similar to:
PaperBLAST

Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans
Also see hits to annotated proteins above

77% id,
98% cov

P0AC33: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli
Also see hits to annotated proteins above

33% id,
94% cov

P14407: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli
Also see hits to annotated proteins above

30% id,
94% cov

809261-812152 (frame -2) on N515DRAFT_scaffold00001.1
is similar to:
PaperBLAST

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens
Also see hits to annotated proteins above

62% id,
99% cov

ACNA_BACSU / P09339: Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis
citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis
P09339: aconitate hydratase (EC 4.2.1.3) from Bacillus subtilis
Also see hits to annotated proteins above

56% id,
99% cov

Q9NFX3: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster
Also see hits to annotated proteins above

52% id,
100% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory