Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 80 curated entries in PaperBLAST's database that match '4.3.1.2'.

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_2941: histidine ammonia-lyase
is similar to:
PaperBLAST

TALY_RHOS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Rhodobacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Rhodobacter sphaeroides

32% id,
88% cov

TAM_MYXSM / B8ZV94: Tyrosine 2,3-aminomutase; MxTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus sp.

42% id,
48% cov

TAM_MYXFU / B8ZV93: Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus

42% id,
48% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

623890-625863 (frame -2) on N515DRAFT_scaffold00003.3
is similar to:
PaperBLAST

TALY_RHOS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Rhodobacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Rhodobacter sphaeroides
Also see hits to annotated proteins above

32% id,
90% cov

PAL_NOSP7 / B2J528: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nostoc punctiforme
Also see hits to annotated proteins above

34% id,
50% cov

PAL_TRIV2 / Q3M5Z3: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Trichormus variabilis
Q3M5Z3: phenylalanine ammonia-lyase (EC 4.3.1.24) from Trichormus variabilis
Also see hits to annotated proteins above

34% id,
50% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory