Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 149 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 99 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_3946: arabinose-5-phosphate isomerase
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

63% id,
98% cov

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
P45395: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Escherichia coli

56% id,
96% cov

GUTQ_ECOLI / P17115: Arabinose 5-phosphate isomerase GutQ; API; G-API; Phosphosugar aldol-ketol isomerase; EC 5.3.1.13 from Escherichia coli
SrlQ / b2708: D-arabinose 5-phosphate isomerase GutQ (EC 5.3.1.13) from Escherichia coli
gutQ / P17115: D-arabinose 5-phosphate isomerase GutQ (EC 5.3.1.13) from Escherichia coli

48% id,
100% cov

More...

N515DRAFT_1376: triosephosphate isomerase
is similar to:
PaperBLAST

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

55% id,
98% cov

TPIS_MORMI / P50921: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
tpiA / PDB|1AW1_A: triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
P50921: triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina

50% id,
98% cov

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus

49% id,
100% cov

More...

N515DRAFT_2933: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

HisA / b2024: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli
hisA / P10371: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli

49% id,
98% cov

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

47% id,
98% cov

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor

38% id,
96% cov

More...

N515DRAFT_4291: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

45% id,
60% cov

N515DRAFT_2932: cyclase
is similar to:
PaperBLAST

HisA / b2024: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli
hisA / P10371: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli

24% id,
84% cov

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

24% id,
84% cov

N515DRAFT_2028: thiazole-phosphate synthase
is similar to:
PaperBLAST

TPIS_METBR / O74025: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanobacterium bryantii
O74025: triose-phosphate isomerase (EC 5.3.1.1) from Methanobacterium bryantii

26% id,
73% cov

N515DRAFT_2170: Nucleotide-binding universal stress protein, UspA family
is similar to:
PaperBLAST

P36186: triose-phosphate isomerase (EC 5.3.1.1) from Giardia intestinalis

25% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory