Curated BLAST for Genomes


Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 18 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0113: phosphoribosylanthranilate isomerase
is similar to:

trpF: phosphoribosylanthranilate isomerase; EC from Burkholderia multivorans

48% id,
90% cov

trpF / Q56320: phosphoribosylanthranilate isomerase subunit (EC from Thermotoga maritima

43% id,
99% cov

trpF / GB|AAA21897.1: phosphoribosylanthranilate isomerase; EC from Acinetobacter calcoaceticus

41% id,
97% cov


N515DRAFT_2933: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
is similar to:

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC; EC from Streptomyces coelicolor
P16250: phosphoribosylanthranilate isomerase (EC from Streptomyces coelicolor

38% id,
96% cov

N515DRAFT_2111: indole-3-glycerol phosphate synthase
is similar to:

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC; EC from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC; EC from Escherichia coli
P00909: phosphoribosylanthranilate isomerase (EC from Escherichia coli

40% id,
56% cov

P24920: phosphoribosylanthranilate isomerase (EC from Phytophthora parasitica

36% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory