Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 186 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_3075: acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

68% id,
98% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

66% id,
98% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

65% id,
98% cov

More...

N515DRAFT_0016: propionyl-CoA synthetase
is similar to:
PaperBLAST

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
P77495: propionate-CoA ligase (EC 6.2.1.17) from Escherichia coli

59% id,
100% cov

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium
prpE / P55912: propionate-CoA ligase (EC 6.2.1.17) from Salmonella typhimurium

59% id,
100% cov

prpE / Q5LPB4: propionate--CoA ligase (EC 6.2.1.17) from Ruegeria pomeroyi

46% id,
99% cov

More...

N515DRAFT_1902: succinyl-CoA synthetase alpha subunit
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

38% id,
82% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

27% id,
30% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

27% id,
30% cov

N515DRAFT_1417: long-chain acyl-CoA synthetase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
93% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

31% id,
95% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

31% id,
94% cov

More...

N515DRAFT_2020: enterobactin synthetase component F
is similar to:
PaperBLAST

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

27% id,
94% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

25% id,
99% cov

B3TJI5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Ruta graveolens

28% id,
89% cov

More...

N515DRAFT_2437: amino acid adenylation domain-containing protein
is similar to:
PaperBLAST

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

28% id,
89% cov

U5MY99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

26% id,
87% cov

4CL3_ARATH / Q9S777: 4-coumarate--CoA ligase 3; 4CL 3; 4-coumarate--CoA ligase isoform 3; At4CL3; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12 from Arabidopsis thaliana
4CL3 / Q9S777: 4-coumarate coenzyme A ligase 3 (EC 6.2.1.12; EC 6.2.1.34) from Arabidopsis thaliana
Q9S777: 4-coumarate-CoA ligase (EC 6.2.1.12) from Arabidopsis thaliana

25% id,
89% cov

More...

N515DRAFT_2436: amino acid adenylation domain-containing protein
is similar to:
PaperBLAST

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

25% id,
93% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

23% id,
99% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

25% id,
90% cov

More...

N515DRAFT_2435: amino acid adenylation domain-containing protein
is similar to:
PaperBLAST

4CL3_ORYSJ / Q6ETN3: 4-coumarate--CoA ligase 3; 4CL 3; Os4CL3; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12 from Oryza sativa
Q6ETN3: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

24% id,
94% cov

4CL4_ORYSJ / Q67W82: 4-coumarate--CoA ligase 4; 4CL 4; Os4CL4; 4-coumaroyl-CoA synthase 4; Protein RESISTANCE TO ALUMINUM 1; EC 6.2.1.12 from Oryza sativa
Q67W82: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

25% id,
89% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

23% id,
95% cov

More...

N515DRAFT_4050: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
is similar to:
PaperBLAST

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

24% id,
59% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

24% id,
59% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

25% id,
48% cov

More...

N515DRAFT_2713: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

ACD1_ARCFU / O29057: Acetate--CoA ligase [ADP-forming] I; ADP-forming acetyl coenzyme A synthetase I; ACS I; EC 6.2.1.13 from Archaeoglobus fulgidus

22% id,
30% cov

ACDB2_PYRFU / Q8TZY8: Acetate--CoA ligase [ADP-forming] II subunit beta; ADP-forming acetyl coenzyme A synthetase II subunit beta; ACS II subunit beta; EC 6.2.1.13 from Pyrococcus furiosus

41% id,
16% cov

pauA / Q9ZER2: pimeloyl-CoA synthetase monomer (EC 6.2.1.14) from Pseudomonas mendocina

24% id,
20% cov

N515DRAFT_0015: collagen, middle region
is similar to:
PaperBLAST

S27A3_HUMAN / Q5K4L6: Solute carrier family 27 member 3; Arachidonate--CoA ligase; Long-chain fatty acid transport protein 3; FATP-3; Fatty acid transport protein 3; Very long-chain acyl-CoA synthetase homolog 3; VLCS-3; EC 6.2.1.-; EC 6.2.1.15 from Homo sapiens

37% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory