Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 4 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuD' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0571: 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
is similar to:
PaperBLAST

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

47% id,
93% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

38% id,
75% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

37% id,
67% cov

N515DRAFT_1419: aconitate hydratase
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

29% id,
68% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

23% id,
75% cov

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

29% id,
38% cov

N515DRAFT_0029: aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming)
is similar to:
PaperBLAST

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

34% id,
50% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

26% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory