Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase small subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_0571: 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
is similar to:
PaperBLAST

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

31% id,
91% cov

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

37% id,
66% cov

N515DRAFT_1419: aconitate hydratase
is similar to:
PaperBLAST

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

29% id,
68% cov

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

38% id,
50% cov

N515DRAFT_0029: aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming)
is similar to:
PaperBLAST

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

26% id,
62% cov

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

35% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory