Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 14 curated entries in PaperBLAST's database that match '1.1.1.179' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS12100: oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+, D-xylono-1,5-lactone-forming) (EC 1.1.1.179) from Haloferax volcanii

27% id,
86% cov

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

25% id,
72% cov

Q5UY95: D-xylose 1-dehydrogenase (NADP+, D-xylono-1,5-lactone-forming) (EC 1.1.1.179); D-xylose 1-dehydrogenase (NADP+, D-xylono-1,4-lactone-forming) (EC 1.1.1.424) from Haloarcula marismortui

27% id,
65% cov

More...

HSERO_RS12095: myo-inositol 2-dehydrogenase
is similar to:
PaperBLAST

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

24% id,
82% cov

XDH_SCHPO / Q9UT60: Probable D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase homolog; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Schizosaccharomyces pombe

24% id,
79% cov

DHDH_HUMAN / Q9UQ10: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Hum2DD; EC 1.3.1.20; EC 1.1.1.179 from Homo sapiens

26% id,
66% cov

More...

HSERO_RS13590: D-galactose-1-dehydrogenase
is similar to:
PaperBLAST

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

23% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory