Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).
These curated entries have 3 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS24000: choline dehydrogenase is similar to: | PaperBLAST |
dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp. | 63% id, 94% cov |
| HSERO_RS23855: choline dehydrogenase is similar to: | PaperBLAST |
dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp. | 39% id, 94% cov |
| HSERO_RS00730: 4-hydroxybutyrate dehydrogenase is similar to: | PaperBLAST |
pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis | 28% id, 95% cov |
| HSERO_RS18570: maleylacetate reductase is similar to: | PaperBLAST |
pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis | 22% id, 92% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 5502081-5503736 (frame -3) on NC_014323 is similar to: | PaperBLAST |
dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp. | 62% id, 97% cov |
| 5468622-5470265 (frame +3) on NC_014323 is similar to: | PaperBLAST |
dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp. | 39% id, 95% cov |
Lawrence Berkeley National Laboratory