Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 7 curated entries in PaperBLAST's database that match '1.1.1.87' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS16500: 3-isopropylmalate dehydrogenase is similar to: | PaperBLAST |
hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus | 39% id, 98% cov |
AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87; EC 1.1.1.- from Methanocaldococcus jannaschii | 39% id, 98% cov |
LYS12_YEAST / P40495: Homoisocitrate dehydrogenase, mitochondrial; HIcDH; EC 1.1.1.87 from Saccharomyces cerevisiae | 37% id, 94% cov |
| HSERO_RS07390: tartrate dehydrogenase is similar to: | PaperBLAST |
hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus | 38% id, 99% cov |
AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87; EC 1.1.1.- from Methanocaldococcus jannaschii | 37% id, 96% cov |
LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe | 36% id, 99% cov |
| HSERO_RS07015: isocitrate dehydrogenase is similar to: | PaperBLAST |
LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe | 27% id, 91% cov |
hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus | 32% id, 71% cov |
AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87; EC 1.1.1.- from Methanocaldococcus jannaschii | 30% id, 59% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory