Curated BLAST
Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 17 curated entries in PaperBLAST's database that match '1.1.2.3'.
These curated entries have 15 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS12985: L-lactate dehydrogenase is similar to: | PaperBLAST |
Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp. | 68% id, 97% cov |
Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa | 67% id, 99% cov |
SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti | 67% id, 98% cov |
PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae | 46% id, 100% cov |
Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa | 45% id, 98% cov |
lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli | 45% id, 95% cov |
CYB2_YEAST / P00175: L-lactate dehydrogenase (cytochrome); Cytochrome b2; Flavocytochrome b2; FCB2; L-lactate ferricytochrome c oxidoreductase; L-LCR; EC 1.1.2.3 from Saccharomyces cerevisiae CYB2 / P00175: L-lactate dehydrogenase subunit (EC 1.1.2.3) from Saccharomyces cerevisiae P00175: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Saccharomyces cerevisiae | 31% id, 50% cov |
W1QKE8: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Ogataea angusta | 33% id, 37% cov |
A0A099P7X2: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pichia kudriavzevii | 36% id, 29% cov |
More... |
HSERO_RS01205: 2-hydroxy-acid oxidase is similar to: | PaperBLAST |
Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa | 41% id, 97% cov |
PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae | 39% id, 99% cov |
Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa | 40% id, 98% cov |
SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti | 40% id, 94% cov |
Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp. | 38% id, 98% cov |
lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli | 37% id, 94% cov |
A0A099P7X2: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pichia kudriavzevii | 31% id, 62% cov |
CYB2_TALSN / B8MKR3: L-lactate dehydrogenase (cytochrome); EC 1.1.2.3 from Talaromyces stipitatus | 38% id, 40% cov |
W1QKE8: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Ogataea angusta | 34% id, 34% cov |
CYB2_YEAST / P00175: L-lactate dehydrogenase (cytochrome); Cytochrome b2; Flavocytochrome b2; FCB2; L-lactate ferricytochrome c oxidoreductase; L-LCR; EC 1.1.2.3 from Saccharomyces cerevisiae CYB2 / P00175: L-lactate dehydrogenase subunit (EC 1.1.2.3) from Saccharomyces cerevisiae P00175: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Saccharomyces cerevisiae | 40% id, 29% cov |
W1QKE8: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Ogataea angusta | 32% id, 31% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory