Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3'.

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS12985: L-lactate dehydrogenase
is similar to:
PaperBLAST

Ac3H11_1623: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Acidovorax sp.

68% id,
97% cov

Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

67% id,
99% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

67% id,
98% cov

More...

HSERO_RS01205: 2-hydroxy-acid oxidase
is similar to:
PaperBLAST

Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

41% id,
97% cov

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

39% id,
99% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

40% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory