Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 42 curated entries in PaperBLAST's database that match '1.1.99.2'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS23855: choline dehydrogenase
is similar to:		 PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

 42% id,
94% cov

PDH1_LEUMG / Q3L245: Pyranose dehydrogenase 1; PDH 1; Pyranose:quinone oxidoreductase 1; EC 1.1.99.29 from Leucoagaricus meleagris
Q3L245: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

 28% id,
94% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

 31% id,
58% cov

More...

HSERO_RS21645: hydroxyglutarate oxidase
is similar to:		 PaperBLAST

L2HDH_INDAL / S2DJ52: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Indibacter alkaliphilus

 39% id,
98% cov

L2HDH_HUMAN / Q9H9P8: L-2-hydroxyglutarate dehydrogenase, mitochondrial; Duranin; EC 1.1.99.2 from Homo sapiens
Q9H9P8: L-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) from Homo sapiens

 41% id,
88% cov

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

 34% id,
72% cov

More...

HSERO_RS24000: choline dehydrogenase
is similar to:		 PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

 37% id,
95% cov

PDH1_AGACM / V5NDL4: Pyranose dehydrogenase; PDH; Pyranose:quinone oxidoreductase 1; EC 1.1.99.29 from Agaricus campestris
V5NDL4: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus campestris

 30% id,
94% cov

PDH3_LEUMG / Q0R4L2: Pyranose dehydrogenase 3; PDH 3; Pyranose:quinone oxidoreductase 3; EC 1.1.99.29 from Leucoagaricus meleagris
Q0R4L2: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

 30% id,
94% cov

More...

HSERO_RS00730: 4-hydroxybutyrate dehydrogenase
is similar to:		 PaperBLAST

A0A024TMA3: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Aphanomyces invadans

 29% id,
92% cov

W4G0G7: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Aphanomyces astaci

 28% id,
91% cov

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum

 30% id,
82% cov

More...

HSERO_RS12100: oxidoreductase
is similar to:		 PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

 25% id,
66% cov

HSERO_RS20980: oxidoreductase
is similar to:		 PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

 26% id,
61% cov

HSERO_RS13590: D-galactose-1-dehydrogenase
is similar to:		 PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

 25% id,
43% cov

HSERO_RS02705: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

 46% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory