Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS19105: FAD-binding protein
is similar to:		 PaperBLAST

RR42_RS17300: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Cupriavidus basilensis

 74% id,
100% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 64% id,
95% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 49% id,
96% cov

More...

HSERO_RS19095: glycolate oxidase
is similar to:		 PaperBLAST

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Cupriavidus basilensis

 65% id,
100% cov

Psest_3839: D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 55% id,
100% cov

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

 44% id,
96% cov

More...

HSERO_RS19100: FAD-binding protein
is similar to:		 PaperBLAST

RR42_RS17310: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Cupriavidus basilensis

 59% id,
98% cov

Psest_3840: D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 50% id,
99% cov

SMc00833: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Sinorhizobium meliloti

 36% id,
98% cov

More...

HSERO_RS19115: D-lactate dehydrogenase
is similar to:		 PaperBLAST

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 34% id,
98% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 31% id,
100% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 34% id,
91% cov

More...

HSERO_RS16560: 2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 32% id,
95% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 33% id,
91% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 30% id,
93% cov

More...

HSERO_RS19500: FAD-linked oxidase
is similar to:		 PaperBLAST

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 29% id,
57% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 32% id,
37% cov

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 26% id,
42% cov

More...

HSERO_RS20275: lactate dehydrogenase
is similar to:		 PaperBLAST

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 31% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory