Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS06545: catechol 1,2-dioxygenase
is similar to:
PaperBLAST

CATA_ACIAD / P07773: Catechol 1,2-dioxygenase; 1,2-CTD; EC 1.13.11.1 from Acinetobacter baylyi
P07773: catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter baylyi

74% id,
100% cov

catA1: catechol 1,2-dioxygenase 1; EC 1.13.11.1 from Acinetobacter lwoffii

60% id,
98% cov

Q8GAY6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

59% id,
99% cov

More...

HSERO_RS18295: 3'-RNA processing protein
is similar to:
PaperBLAST

catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii

71% id,
96% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

63% id,
100% cov

Q9F103: catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter radioresistens

55% id,
100% cov

More...

HSERO_RS18575: hydroxyquinol 1,2-dioxygenase
is similar to:
PaperBLAST

HQDA_ASPNC / A2QAP8: Intradiol ring-cleavage dioxygenase hqdA; EC 1.13.11.1; EC 1.13.11.37 from Aspergillus niger

46% id,
86% cov

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans

40% id,
86% cov

salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
Q0VH42: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

31% id,
91% cov

More...

HSERO_RS19920: protocatechuate 3,4-dioxygenase subunit beta
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

35% id,
52% cov

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans

33% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4260972-4262939 (frame -3) on NC_014323
is similar to:
PaperBLAST

HQDA_ASPNC / A2QAP8: Intradiol ring-cleavage dioxygenase hqdA; EC 1.13.11.1; EC 1.13.11.37 from Aspergillus niger
Also see hits to annotated proteins above

45% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory