Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 27 curated entries in PaperBLAST's database that match '1.13.11.27'.

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS08335: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

Psest_3514: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas stutzeri

66% id,
96% cov

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

60% id,
99% cov

AO356_22845: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

60% id,
99% cov

More...

HSERO_RS18800: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

AO356_22845: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

32% id,
84% cov

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

32% id,
84% cov

Psest_3514: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas stutzeri

31% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory