Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 161 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 123 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS05605: homogentisate 1,2-dioxygenase
is similar to:
PaperBLAST

RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis

75% id,
96% cov

HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida
Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida

60% id,
97% cov

HGD_PSEPU / Q6EMI9: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida

60% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory