Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 1 curated entries in PaperBLAST's database that match '1.13.12.4'.
These curated entries have 1 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS01205: 2-hydroxy-acid oxidase is similar to: | PaperBLAST |
LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis | 35% id, 93% cov |
| HSERO_RS12985: L-lactate dehydrogenase is similar to: | PaperBLAST |
LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis | 32% id, 92% cov |
| HSERO_RS11015: inosine 5'-monophosphate dehydrogenase is similar to: | PaperBLAST |
LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis | 35% id, 26% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2960585-2961838 (frame +2) on NC_014323 is similar to: | PaperBLAST |
LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis | 32% id, 97% cov |
Lawrence Berkeley National Laboratory