Curated BLAST for Genomes


Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 22 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS21390: phenylalanine 4-monooxygenase
is similar to:

Ac3H11_1847: Phenylalanine 4-monooxygenase (EC from Acidovorax sp.

61% id,
86% cov

phhA / P30967: phenylalanine hydroxylase (EC from Chromobacterium violaceum
P30967: phenylalanine 4-monooxygenase (EC from Chromobacterium violaceum

53% id,
96% cov

AO356_03975: Phenylalanine 4-monooxygenase (EC from Pseudomonas fluorescens

46% id,
90% cov


HSERO_RS18430: chorismate mutase
is similar to:

PH4H_DICDI / Q54XS1: Phenylalanine-4-hydroxylase; PAH; Phe-4-monooxygenase; Tryptophan 5-hydroxylase; TRH; Tryptophan 5-monooxygenase; EC; EC from Dictyostelium discoideum

33% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory