Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS07310: dihydrolipoamide acetyltransferase is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 58% id, 83% cov |
| HSERO_RS18425: prephenate dehydrogenase is similar to: | PaperBLAST |
TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis | 37% id, 96% cov |
O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus | 40% id, 84% cov |
Q81P63: prephenate dehydrogenase (EC 1.3.1.12) from Bacillus anthracis | 37% id, 74% cov |
| HSERO_RS14880: dihydrolipoamide succinyltransferase is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 31% id, 67% cov |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 29% id, 37% cov |
| HSERO_RS18430: chorismate mutase is similar to: | PaperBLAST |
TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli | 24% id, 78% cov |
O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus | 32% id, 56% cov |
| HSERO_RS07315: dihydrolipoamide dehydrogenase is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 42% id, 29% cov |
| HSERO_RS16185: chemotaxis protein is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 24% id, 49% cov |
| HSERO_RS00980: FmdB family transcriptional regulator is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 63% id, 5% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory