Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 43 curated entries in PaperBLAST's database that match '1.3.3.6' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS23440: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

31% id,
83% cov

J7K6M3: acyl-CoA oxidase (EC 1.3.3.6) from Prunus persica

25% id,
47% cov

HSERO_RS12750: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
84% cov

HSERO_RS14055: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
77% cov

HSERO_RS18135: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
82% cov

HSERO_RS04640: butyryl-CoA dehydrogenase
is similar to:
PaperBLAST

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

24% id,
56% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

24% id,
55% cov

O62137: acyl-CoA oxidase (EC 1.3.3.6) from Caenorhabditis elegans

25% id,
35% cov

HSERO_RS17250: 2-nitropropane dioxygenase
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

34% id,
36% cov

HSERO_RS01255: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ACOX3_RAT / Q63448: Peroxisomal acyl-coenzyme A oxidase 3; Branched-chain acyl-CoA oxidase; BRCACox; Pristanoyl-CoA oxidase; EC 1.3.3.6 from Rattus norvegicus

24% id,
46% cov

HSERO_RS17480: nitronate monooxygenase
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

38% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5376881-5378161 (frame +2) on NC_014323
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Also see hits to annotated proteins above

30% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory