Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS19260: glutamate dehydrogenase
is similar to:
PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

55% id,
98% cov

Q43314: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Arabidopsis thaliana

50% id,
95% cov

Q5QDM6: glutamate dehydrogenase (EC 1.4.1.2) from Lupinus luteus

49% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory