Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).
These curated entries have 2 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS17625: tyramine oxidase is similar to: | PaperBLAST |
AO1 / O23349: copper-containing amine oxidase (EC 1.4.3.21; EC 1.4.3.10) from Arabidopsis thaliana | 31% id, 97% cov |
| HSERO_RS06425: amine oxidase N is similar to: | PaperBLAST |
puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea | 27% id, 95% cov |
| HSERO_RS19590: dihydropyrimidine dehydrogenase subunit A is similar to: | PaperBLAST |
puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea | 30% id, 30% cov |
| HSERO_RS12980: phytoene dehydrogenase is similar to: | PaperBLAST |
puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea | 31% id, 15% cov |
| HSERO_RS21625: NAD(FAD)-utilizing dehydrogenase is similar to: | PaperBLAST |
puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea | 50% id, 8% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 4951270-4952643 (frame +1) on NC_014323 is similar to: | PaperBLAST |
puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea | 42% id, 11% cov |
Lawrence Berkeley National Laboratory