Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 43 curated entries in PaperBLAST's database that match '1.4.3.21'.

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS17625: tyramine oxidase
is similar to:
PaperBLAST

AMO_KLEM8 / P80695: Primary amine oxidase; Monamine oxidase; Tyramine oxidase; EC 1.4.3.21 from Klebsiella michiganensis

69% id,
99% cov

AMO_ECOLI / P46883: Primary amine oxidase; 2-phenylethylamine oxidase; Copper amine oxidase; Tyramine oxidase; EC 1.4.3.21 from Escherichia coli
MaoA / b1386: copper-containing amine oxidase (EC 1.4.3.21) from Escherichia coli
tynA / P46883: copper-containing amine oxidase (EC 1.4.3.21) from Escherichia coli

69% id,
98% cov

A1R2C3: primary-amine oxidase (EC 1.4.3.21) from Paenarthrobacter aurescens

33% id,
97% cov

More...

HSERO_RS06425: amine oxidase N
is similar to:
PaperBLAST

AOFB_MOUSE / Q8BW75: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Mus musculus

24% id,
60% cov

AOFA_HUMAN / P21397: Amine oxidase [flavin-containing] A; Monoamine oxidase type A; MAO-A; EC 1.4.3.21; EC 1.4.3.4 from Homo sapiens

23% id,
59% cov

AOFB_BOVIN / P56560: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Bos taurus

43% id,
14% cov

More...

HSERO_RS01275: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

AOFB_BOVIN / P56560: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Bos taurus

34% id,
25% cov

AOFB_HUMAN / P27338: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Homo sapiens
MAOB / P27338: monoamine oxidase B subunit (EC 1.4.3.21; EC 1.4.3.4) from Homo sapiens

42% id,
17% cov

AOFB_RAT / P19643: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Rattus norvegicus

41% id,
17% cov

More...

HSERO_RS05650: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

AOFA_HUMAN / P21397: Amine oxidase [flavin-containing] A; Monoamine oxidase type A; MAO-A; EC 1.4.3.21; EC 1.4.3.4 from Homo sapiens

33% id,
16% cov

HSERO_RS05695: D-amino acid oxidase
is similar to:
PaperBLAST

AOFA_MOUSE / Q64133: Amine oxidase [flavin-containing] A; Monoamine oxidase type A; MAO-A; EC 1.4.3.21; EC 1.4.3.4 from Mus musculus

39% id,
10% cov

HSERO_RS07315: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

AOFB_HUMAN / P27338: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Homo sapiens
MAOB / P27338: monoamine oxidase B subunit (EC 1.4.3.21; EC 1.4.3.4) from Homo sapiens

47% id,
7% cov

AOFB_RAT / P19643: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Rattus norvegicus

45% id,
7% cov

AOFB_BOVIN / P56560: Amine oxidase [flavin-containing] B; Monoamine oxidase type B; MAO-B; EC 1.4.3.21; EC 1.4.3.4 from Bos taurus

45% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory