Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 118 curated entries in PaperBLAST's database that match '1.5.1.2'.

These curated entries have 93 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS21425: 5,10-methylenetetrahydrofolate reductase
is similar to:
PaperBLAST

Q6J6A1: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Collimonas fungivorans

86% id,
96% cov

Q8Y389: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Ralstonia solanacearum

73% id,
98% cov

Q7NZF6: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Chromobacterium violaceum

68% id,
99% cov

More...

HSERO_RS04760: FMN reductase
is similar to:
PaperBLAST

msuE / GB|AAG05745.1: NADH-dependent FMN reductase MsuE; EC 1.5.1.29 from Pseudomonas aeruginosa

53% id,
95% cov

HSERO_RS18990: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

47% id,
95% cov

P5CR_ECOLI / P0A9L8: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Escherichia coli
ProC / b0386: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Escherichia coli
proC / P0A9L8: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Escherichia coli

35% id,
95% cov

P5CR_METAC / Q9HH99: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Methanosarcina acetivorans

33% id,
95% cov

More...

HSERO_RS07295: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
is similar to:
PaperBLAST

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

46% id,
87% cov

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus

46% id,
87% cov

HSERO_RS22840: ornithine cyclodeaminase
is similar to:
PaperBLAST

F1RPC8: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Sus scrofa

31% id,
96% cov

O54983: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Mus musculus

31% id,
96% cov

CRYM_HUMAN / Q14894: Ketimine reductase mu-crystallin; NADP-regulated thyroid-hormone-binding protein; EC 1.5.1.25 from Homo sapiens
CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens
Q14894: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21); thiomorpholine-carboxylate dehydrogenase (EC 1.5.1.25) from Homo sapiens

31% id,
96% cov

More...

HSERO_RS08190: NADPH-dependent FMN reductase
is similar to:
PaperBLAST

msuE / GB|AAG05745.1: NADH-dependent FMN reductase MsuE; EC 1.5.1.29 from Pseudomonas aeruginosa

31% id,
90% cov

HSERO_RS00880: ornithine cyclodeaminase
is similar to:
PaperBLAST

Q9QYU4: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Rattus norvegicus

30% id,
92% cov

O54983: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Mus musculus

30% id,
92% cov

CRYM_HUMAN / Q14894: Ketimine reductase mu-crystallin; NADP-regulated thyroid-hormone-binding protein; EC 1.5.1.25 from Homo sapiens
CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens
Q14894: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21); thiomorpholine-carboxylate dehydrogenase (EC 1.5.1.25) from Homo sapiens

29% id,
92% cov

More...

HSERO_RS16685: lactate dehydrogenase
is similar to:
PaperBLAST

PY2CR_PSEAE / Q9I492: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; Delta(1)-pyrroline-(4S)-hydroxy-2-carboxylate reductase; Pyr4SH2C reductase; Proline ketimine reductase; EC 1.5.1.21; EC 1.5.1.- from Pseudomonas aeruginosa
Q9I492: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Pseudomonas aeruginosa

27% id,
99% cov

HSERO_RS00300: ornithine cyclodeaminase
is similar to:
PaperBLAST

B1GT63: Strombine dehydrogenase (EC 1.5.1.22) from Suberites domuncula

29% id,
69% cov

tadh / Q60FC7: tauropine dehydrogenase (EC 1.5.1.23) from Halichondria japonica

25% id,
69% cov

HSERO_RS21740: methionine synthase
is similar to:
PaperBLAST

YITJ_BACSU / O06745: Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; EC 2.1.1.10; EC 1.5.1.20 from Bacillus subtilis

28% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4905315-4906211 (frame -3) on NC_014323
is similar to:
PaperBLAST

Q6J6A1: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Collimonas fungivorans
Also see hits to annotated proteins above

84% id,
99% cov

O67422: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Aquifex aeolicus
Also see hits to annotated proteins above

41% id,
97% cov

Q87L52: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Vibrio parahaemolyticus
Also see hits to annotated proteins above

39% id,
95% cov

More...

4355272-4356111 (frame -2) on NC_014323
is similar to:
PaperBLAST

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

48% id,
99% cov

P5CR_ECOLI / P0A9L8: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Escherichia coli
ProC / b0386: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Escherichia coli
proC / P0A9L8: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Escherichia coli
Also see hits to annotated proteins above

37% id,
99% cov

P5CR_METAC / Q9HH99: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Methanosarcina acetivorans
Also see hits to annotated proteins above

35% id,
99% cov

More...

1669398-1670321 (frame -3) on NC_014323
is similar to:
PaperBLAST

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus
Also see hits to annotated proteins above

45% id,
95% cov

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus
Also see hits to annotated proteins above

45% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory