Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 6 curated entries in PaperBLAST's database that match '1.5.3.7'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS05840: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

35% id,
95% cov

HSERO_RS01275: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

29% id,
91% cov

HSERO_RS05650: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

29% id,
84% cov

HSERO_RS05695: D-amino acid oxidase
is similar to:
PaperBLAST

Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

34% id,
17% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

33% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory