Curated BLAST for Genomes


Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 48 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS07185: ornithine carbamoyltransferase
is similar to:

HSERO_RS07185: Ornithine carbamoyltransferase (EC from Herbaspirillum seropedicae

100% id,
100% cov

OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC from Pseudomonas aeruginosa

52% id,
100% cov

OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC from Pseudomonas savastanoi

53% id,
98% cov


HSERO_RS02330: aspartate carbamoyltransferase
is similar to:

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC from Pyrococcus furiosus

28% id,
97% cov

OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC from Halobacterium salinarum
arcB / Q48296: ArcB (EC from Halobacterium salinarum
Q48296: ornithine carbamoyltransferase (EC from Halobacterium salinarum

27% id,
98% cov

O93656: ornithine carbamoyltransferase (EC from Pyrococcus abyssi

28% id,
93% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory