Curated BLAST for Genomes


Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 3 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS07185: ornithine carbamoyltransferase
is similar to:

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC from Xanthomonas campestris

31% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory