Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 7 curated entries in PaperBLAST's database that match '2.3.1.182' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS14210: homocitrate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.1.182 from Methanocaldococcus jannaschii

40% id,
74% cov

BT1858: (R)-citramalate synthase (EC 2.3.1.182) from Bacteroides thetaiotaomicron

34% id,
70% cov

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.1.182 from Leptospira interrogans

32% id,
71% cov

More...

HSERO_RS17185: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.1.182 from Methanocaldococcus jannaschii

24% id,
98% cov

CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.1.182 from Sulfolobus acidocaldarius

24% id,
95% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.1.182) from Thermoanaerobacter sp.

23% id,
98% cov

More...

HSERO_RS04700: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.1.182 from Methanocaldococcus jannaschii

23% id,
74% cov

CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.1.182 from Sulfolobus acidocaldarius

25% id,
65% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.1.182) from Thermoanaerobacter sp.

32% id,
26% cov

More...

HSERO_RS23475: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.1.182 from Leptospira interrogans

23% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory