Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 80 curated entries in PaperBLAST's database that match '2.3.1.29'.

These curated entries have 47 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS09615: 3-oxoacyl-ACP synthase
is similar to:
PaperBLAST

KASA_MYCTE / H8ESN0: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; EC 2.3.1.293 from Mycobacterium tuberculosis
KASA_MYCTU / P9WQD9: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; Beta-ketoacyl-acyl carrier protein synthase KasA; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I; EC 2.3.1.293 from Mycobacterium tuberculosis
kasA / P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I monomer (EC 2.3.1.41; EC 2.3.1.179; EC 2.3.1.293) from Mycobacterium tuberculosis
P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I (EC 2.3.1.293); beta-ketoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41) from Mycobacterium tuberculosis

40% id,
97% cov

KASB_MYCTU / P9WQD7: 3-oxoacyl-[acyl-carrier-protein] synthase 2; Beta-ketoacyl-ACP synthase 2; KAS 2; Beta-ketoacyl-acyl carrier protein synthase KasB; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II; EC 2.3.1.294 from Mycobacterium tuberculosis
kasB / P9WQD7: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II (EC 2.3.1.294) from Mycobacterium tuberculosis

35% id,
97% cov

PPSE_MYCTU / P9WQE1: Phenolphthiocerol/phthiocerol polyketide synthase subunit E; (Phenol)carboxyphthiodiolenone synthase subunit E; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsE; EC 2.3.1.292 from Mycobacterium tuberculosis

26% id,
29% cov

More...

HSERO_RS12245: 8-amino-7-oxononanoate synthase
is similar to:
PaperBLAST

BIKB_THET8 / Q5SHZ8: 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; Glycine acetyltransferase; EC 2.3.1.29; EC 2.3.1.47 from Thermus thermophilus

40% id,
95% cov

KBL_ECOLI / P0AB77: 2-amino-3-ketobutyrate coenzyme A ligase; AKB ligase; Glycine acetyltransferase; EC 2.3.1.29 from Escherichia coli
Kbl / b3617: 2-amino-3-ketobutyrate CoA ligase (EC 2.3.1.29) from Escherichia coli
kbl: 2-amino-3-ketobutyrate coenzyme A ligase; EC 2.3.1.29 from Escherichia coli
kbl / P0AB77: 2-amino-3-ketobutyrate CoA ligase (EC 2.3.1.29) from Escherichia coli
P0AB77: glycine C-acetyltransferase (EC 2.3.1.29) from Escherichia coli

37% id,
97% cov

RR42_RS28295: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) from Cupriavidus basilensis

38% id,
95% cov

More...

HSERO_RS18545: 3-oxoacyl-ACP synthase
is similar to:
PaperBLAST

KASB_MYCTU / P9WQD7: 3-oxoacyl-[acyl-carrier-protein] synthase 2; Beta-ketoacyl-ACP synthase 2; KAS 2; Beta-ketoacyl-acyl carrier protein synthase KasB; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II; EC 2.3.1.294 from Mycobacterium tuberculosis
kasB / P9WQD7: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II (EC 2.3.1.294) from Mycobacterium tuberculosis

33% id,
97% cov

KASA_MYCTE / H8ESN0: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; EC 2.3.1.293 from Mycobacterium tuberculosis
KASA_MYCTU / P9WQD9: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; Beta-ketoacyl-acyl carrier protein synthase KasA; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I; EC 2.3.1.293 from Mycobacterium tuberculosis
kasA / P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I monomer (EC 2.3.1.41; EC 2.3.1.179; EC 2.3.1.293) from Mycobacterium tuberculosis
P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I (EC 2.3.1.293); beta-ketoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41) from Mycobacterium tuberculosis

33% id,
97% cov

PPSB_MYCTU / P9WQE5: Phenolphthiocerol/phthiocerol polyketide synthase subunit B; (Phenol)carboxyphthiodiolenone synthase subunit B; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsB; EC 2.3.1.292 from Mycobacterium tuberculosis

25% id,
28% cov

More...

HSERO_RS18530: 3-oxoacyl-ACP synthase
is similar to:
PaperBLAST

KASB_MYCTU / P9WQD7: 3-oxoacyl-[acyl-carrier-protein] synthase 2; Beta-ketoacyl-ACP synthase 2; KAS 2; Beta-ketoacyl-acyl carrier protein synthase KasB; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II; EC 2.3.1.294 from Mycobacterium tuberculosis
kasB / P9WQD7: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II (EC 2.3.1.294) from Mycobacterium tuberculosis

31% id,
97% cov

KASA_MYCTE / H8ESN0: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; EC 2.3.1.293 from Mycobacterium tuberculosis
KASA_MYCTU / P9WQD9: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; Beta-ketoacyl-acyl carrier protein synthase KasA; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I; EC 2.3.1.293 from Mycobacterium tuberculosis
kasA / P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I monomer (EC 2.3.1.41; EC 2.3.1.179; EC 2.3.1.293) from Mycobacterium tuberculosis
P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I (EC 2.3.1.293); beta-ketoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41) from Mycobacterium tuberculosis

31% id,
91% cov

PPSD_MYCTU / P9WQE3: Phenolphthiocerol/phthiocerol polyketide synthase subunit D; (Phenol)carboxyphthiodiolenone synthase subunit D; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsD; EC 2.3.1.292 from Mycobacterium tuberculosis

26% id,
21% cov

More...

HSERO_RS09750: 8-amino-7-oxononanoate synthase
is similar to:
PaperBLAST

Shewana3_4104: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) from Shewanella sp.

27% id,
97% cov

RR42_RS28295: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) from Cupriavidus basilensis

27% id,
92% cov

BWI76_RS27255: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) from Klebsiella michiganensis

25% id,
93% cov

More...

HSERO_RS11735: hypothetical protein
is similar to:
PaperBLAST

PPSE_MYCTU / P9WQE1: Phenolphthiocerol/phthiocerol polyketide synthase subunit E; (Phenol)carboxyphthiodiolenone synthase subunit E; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsE; EC 2.3.1.292 from Mycobacterium tuberculosis

28% id,
38% cov

PPSE_MYCBO / Q7TXL6: Phenolphthiocerol/phthiocerol polyketide synthase subunit E; (Phenol)carboxyphthiodiolenone synthase subunit E; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsE; EC 2.3.1.292 from Mycobacterium bovis

28% id,
38% cov

B4ER97: spectinabilin polyketide synthase system (subunit 1/4) (EC 2.3.1.290) from Streptomyces orinoci

24% id,
30% cov

More...

HSERO_RS07455: NADPH:quinone oxidoreductase
is similar to:
PaperBLAST

B4ER96: spectinabilin polyketide synthase system (subunit 2/4) (EC 2.3.1.290) from Streptomyces orinoci

33% id,
14% cov

PKS12_MYCTU / I6XD69: Mycoketide-CoA synthase; Polyketide synthase Pks12; EC 2.3.1.295 from Mycobacterium tuberculosis
pks12 / I6XD69: mycoketide-CoA synthase monomer (EC 2.3.1.295) from Mycobacterium tuberculosis

33% id,
6% cov

HSERO_RS09600: malonyl CoA-ACP transacylase
is similar to:
PaperBLAST

B4ER92: spectinabilin polyketide synthase system (subunit 4/4) (EC 2.3.1.290) from Streptomyces orinoci

28% id,
16% cov

B4ER96: spectinabilin polyketide synthase system (subunit 2/4) (EC 2.3.1.290) from Streptomyces orinoci

31% id,
13% cov

B4ER95: spectinabilin polyketide synthase system (subunit 3/4) (EC 2.3.1.290) from Streptomyces orinoci

31% id,
8% cov

More...

HSERO_RS08800: NAD(P)H quinone oxidoreductase
is similar to:
PaperBLAST

PPSC_MYCBO / Q7TXL8: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium bovis
PPSC_MYCTU / P96202: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium tuberculosis

29% id,
14% cov

HSERO_RS17735: quinone oxidoreductase
is similar to:
PaperBLAST

PPSC_MYCBO / Q7TXL8: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium bovis
PPSC_MYCTU / P96202: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium tuberculosis

27% id,
15% cov

B4ER96: spectinabilin polyketide synthase system (subunit 2/4) (EC 2.3.1.290) from Streptomyces orinoci

33% id,
11% cov

HSERO_RS13435: malonyl CoA-ACP transacylase
is similar to:
PaperBLAST

PKS12_MYCTU / I6XD69: Mycoketide-CoA synthase; Polyketide synthase Pks12; EC 2.3.1.295 from Mycobacterium tuberculosis
pks12 / I6XD69: mycoketide-CoA synthase monomer (EC 2.3.1.295) from Mycobacterium tuberculosis

28% id,
7% cov

HSERO_RS20660: acetyl-CoA acetyltransferase
is similar to:
PaperBLAST

B4ER95: spectinabilin polyketide synthase system (subunit 3/4) (EC 2.3.1.290) from Streptomyces orinoci

34% id,
2% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory