Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS14210: homocitrate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii | 40% id, 74% cov |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans | 32% id, 71% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 31% id, 69% cov |
| HSERO_RS17185: 2-isopropylmalate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii | 24% id, 98% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 24% id, 95% cov |
B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp. | 23% id, 98% cov |
| HSERO_RS04700: 2-isopropylmalate synthase is similar to: | PaperBLAST |
CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii | 23% id, 74% cov |
CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius | 25% id, 65% cov |
DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris | 25% id, 63% cov |
| HSERO_RS23475: hydroxymethylglutaryl-CoA lyase is similar to: | PaperBLAST |
CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans | 23% id, 28% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory