Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5'.

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS15655: methylcitrate synthase
is similar to:
PaperBLAST

PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator
Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans

88% id,
100% cov

Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator

89% id,
96% cov

PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli
YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
prpC / GB|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli
prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

82% id,
97% cov

More...

HSERO_RS14890: type II citrate synthase
is similar to:
PaperBLAST

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

34% id,
99% cov

PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum
Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum

31% id,
98% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

31% id,
100% cov

More...

HSERO_RS06380: excisionase
is similar to:
PaperBLAST

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

32% id,
51% cov

PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum
Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum

31% id,
49% cov

Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa

30% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory