Curated BLAST
Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).
These curated entries have 22 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS15200: malate synthase is similar to: | PaperBLAST |
BPHYT_RS12305: Malate synthase (EC 2.3.3.9) from Burkholderia phytofirmans | 78% id, 99% cov |
MASY_DICDI / Q8T2K9: Malate synthase; EC 2.3.3.9 from Dictyostelium discoideum | 53% id, 97% cov |
Q9ZH77: malate synthase (EC 2.3.3.9) from Streptomyces clavuligerus | 52% id, 98% cov |
Q5YLB8: malate synthase (EC 2.3.3.9) from Paracoccidioides brasiliensis | 53% id, 96% cov |
acuE: malate synthase; EC 2.3.3.9 from Emericella nidulans | 52% id, 97% cov |
MLS1: malate synthase; EC 2.3.3.9 from Candida albicans | 53% id, 95% cov |
SO1483: Malate synthase (EC 2.3.3.9) from Shewanella oneidensis | 51% id, 95% cov |
MLS2_YEAST / P21826: Malate synthase 2; Degradation of allantoin protein 7; EC 2.3.3.9 from Saccharomyces cerevisiae DAL7 / P21826: malate synthase 2 (EC 2.3.3.7; EC 2.3.3.9) from Saccharomyces cerevisiae | 49% id, 98% cov |
Mas / b4014: malate synthase A (EC 2.3.3.9) from Escherichia coli aceB / P08997: malate synthase A (EC 2.3.3.9) from Escherichia coli | 50% id, 95% cov |
MLS1_YEAST / P30952: Malate synthase 1; EC 2.3.3.9 from Saccharomyces cerevisiae MLS1 / P30952: malate synthase (EC 2.3.3.7; EC 2.3.3.9) from Saccharomyces cerevisiae | 51% id, 92% cov |
MASY_ARATH / Q9LZC3: Malate synthase; EC 2.3.3.9 from Arabidopsis thaliana MLS / Q9LZC3: malate synthase (EC 2.3.3.9) from Arabidopsis thaliana | 48% id, 95% cov |
MASY_ORYSJ / Q7XUG1: Malate synthase; EC 2.3.3.9 from Oryza sativa | 47% id, 95% cov |
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans | 50% id, 54% cov |
SSO1334 / Q97YI7: malate synthase subunit (EC 2.3.3.9) from Saccharolobus solfataricus Q97YI7: malate synthase (EC 2.3.3.9) from Saccharolobus solfataricus | 33% id, 38% cov |
MASZ_MYCLB / B8ZSN3: Malate synthase G; EC 2.3.3.9 from Mycobacterium leprae | 24% id, 34% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory