Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS15200: malate synthase
is similar to:
PaperBLAST

BPHYT_RS12305: Malate synthase (EC 2.3.3.9) from Burkholderia phytofirmans

78% id,
99% cov

MASY_DICDI / Q8T2K9: Malate synthase; EC 2.3.3.9 from Dictyostelium discoideum

53% id,
97% cov

Q9ZH77: malate synthase (EC 2.3.3.9) from Streptomyces clavuligerus

52% id,
98% cov

More...

HSERO_RS10565: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

63% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory