Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 107 curated entries in PaperBLAST's database that match '2.4.1.13' as complete word(s).

These curated entries have 69 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS13790: glycosyl transferase group 1 protein is similar to:	PaperBLAST
SUS_NITEU / Q820M5: Sucrose synthase; SuSyNe; EC 2.4.1.13 from Nitrosomonas europaea CAD85125.1: sucrose synthase (Ss2;SuSyNe;NE1214) (EC 2.4.1.13) Q820M5: sucrose synthase (EC 2.4.1.13) from Nitrosomonas europaea	24% id, 32% cov
CAB40794.1: sucrose synthase S1 (MtSucS1;SucS1) (EC 2.4.1.13)	30% id, 13% cov
AAC17867.1: sucrose synthase (MsSUS1) (EC 2.4.1.13)	30% id, 13% cov
P31926: sucrose synthase (EC 2.4.1.13) from Vicia faba	30% id, 13% cov
Q9T0M9: sucrose synthase (EC 2.4.1.13) from Pisum sativum	30% id, 13% cov
AAC28107.1: nodule-enhanced sucrose synthase (Ness) (EC 2.4.1.13) O81610: sucrose synthase (EC 2.4.1.13) from Pisum sativum	30% id, 13% cov
More...

HSERO_RS06280: GDP-mannose-dependent alpha-mannosyltransferase is similar to:	PaperBLAST
BAA01108.1: sucrose synthase (Ss1) (EC 2.4.1.13)	28% id, 24% cov
SUS2_ORYSJ / P30298: Sucrose synthase 2; OsSUS2; Sucrose synthase 1; RSs1; Sucrose-UDP glucosyltransferase 2; EC 2.4.1.13 from Oryza sativa AAL31375.1: sucrose synthase 1 (Os06g0194900) (EC 2.4.1.13)	25% id, 26% cov
CAC32462.1: sucrose synthase 3 (Sus3) (EC 2.4.1.13) Q9AVR8: sucrose synthase (EC 2.4.1.13) from Pisum sativum	26% id, 24% cov
G1FNX7: sucrose synthase (EC 2.4.1.13) from Gossypium hirsutum	23% id, 26% cov
AAA33514.1: Sucrose synthase 2 (Sus1) (EC 2.4.1.13)	24% id, 24% cov
SUS_ACICK / A0A059ZV61: Sucrose synthase; SuSyAc; EC 2.4.1.13 from Acidithiobacillus caldus AIA55343.1: sucrose synthase (SuSyAc;Acaty_c1477) (EC 2.4.1.13) A0A059ZV61: sucrose synthase (EC 2.4.1.13) from Acidithiobacillus caldus	28% id, 20% cov
AAV64256.2: sucrose synthase (Sus1;BoSuS1) (EC 2.4.1.13)	24% id, 24% cov
CAA76057.1: sucrose synthase isoform II (SusyDc2) (EC 2.4.1.13) O49845: sucrose synthase (EC 2.4.1.13) from Daucus carota*	27% id, 21% cov
SUS5_ARATH / F4K5W8: Sucrose synthase 5; AtSUS5; Sucrose-UDP glucosyltransferase 5; EC 2.4.1.13 from Arabidopsis thaliana SUS5 / F4K5W8: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana F4K5W8: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana	25% id, 22% cov
Q00P16: sucrose synthase (EC 2.4.1.13) from Eucalyptus grandis	26% id, 20% cov
Q9T0M9: sucrose synthase (EC 2.4.1.13) from Pisum sativum	28% id, 19% cov
E0Z1D0: sucrose synthase (EC 2.4.1.13) from Solanum lycopersicum	25% id, 21% cov
Q0E7D4: sucrose synthase (EC 2.4.1.13) from Coffea arabica	25% id, 21% cov
AAR19769.1: sucrose synthase (SBSS2) (EC 2.4.1.13)	27% id, 19% cov
AAL50571.1: sucrose synthase (Sus2;BoSuS2) (EC 2.4.1.13)	25% id, 21% cov
AAM95944.1: sucrose synthase (Sus) (EC 2.4.1.13)	28% id, 18% cov
CAA53081.1: sucrose synthase isoform I (Susy*Dc1) (EC 2.4.1.13)	27% id, 19% cov
CAA57881.1: sucrose synthase (Css1) (EC 2.4.1.13)	27% id, 19% cov
AAC28107.1: nodule-enhanced sucrose synthase (Ness) (EC 2.4.1.13) O81610: sucrose synthase (EC 2.4.1.13) from Pisum sativum	27% id, 19% cov
AAM95943.1: sucrose synthase (Sus1) (EC 2.4.1.13)	27% id, 18% cov
SUS5_ORYSJ / H6TFZ4: Sucrose synthase 5; OsSUS5; Sucrose-UDP glucosyltransferase 5; EC 2.4.1.13 from Oryza sativa	30% id, 16% cov
SUS7_ORYSJ / Q7XNX6: Sucrose synthase 7; OsSUS7; Sucrose-UDP glucosyltransferase 7; EC 2.4.1.13 from Oryza sativa	30% id, 16% cov
SUS_THEVB / Q8DK23: Sucrose synthase; SuSyTe; EC 2.4.1.13 from Thermosynechococcus vestitus BAC08600.1: ADP-Glc: sucrose synthase (SusA;Te-SuS;Tlr1047) (EC 2.4.1.13)	29% id, 17% cov
K9K7W3: sucrose synthase (EC 2.4.1.13) from Cucumis sativus	26% id, 19% cov
CAA65640.1: sucrose synthase (EC 2.4.1.13)	26% id, 19% cov
AAC41682.1: sucrose synthase 3 (SS3;Os07g0616800) (EC 2.4.1.13)	25% id, 19% cov
SUS3_ORYSJ / Q43009: Sucrose synthase 3; OsSUS3; RSs3; Sucrose-UDP glucosyltransferase 3; EC 2.4.1.13 from Oryza sativa Q43009: sucrose synthase (EC 2.4.1.13) from Oryza sativa	25% id, 19% cov
SUS1_ORYSJ / P31924: Sucrose synthase 1; OsSUS1; Sucrose synthase 2; RSs2; Sucrose-UDP glucosyltransferase 1; EC 2.4.1.13 from Oryza sativa AAK52129.1: sucrose synthase 2 (Os03g0401300) (EC 2.4.1.13) P31924: sucrose synthase (EC 2.4.1.13) from Oryza sativa	25% id, 19% cov
Q00P15: sucrose synthase (EC 2.4.1.13) from Eucalyptus grandis	25% id, 19% cov
SUS4_ARATH / Q9LXL5: Sucrose synthase 4; AtSUS4; Sucrose-UDP glucosyltransferase 4; EC 2.4.1.13 from Arabidopsis thaliana SUS4 / Q9LXL5: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana Q9LXL5: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana	25% id, 19% cov
F8SM21: sucrose synthase (EC 2.4.1.13) from Hordeum vulgare	26% id, 18% cov
SUS1_HORVU / P31922: Sucrose synthase 1; Sucrose-UDP glucosyltransferase 1; EC 2.4.1.13 from Hordeum vulgare CAA46701.1: sucrose synthase 1 (Ss1) (EC 2.4.1.13) P31922: sucrose synthase (EC 2.4.1.13) from Hordeum vulgare	26% id, 17% cov
SUS1_ARATH / P49040: Sucrose synthase 1; AtSUS1; Sucrose-UDP glucosyltransferase 1; EC 2.4.1.13 from Arabidopsis thaliana NP_197583.1: sucrose synthase 1 (Sus1;AtSus1;At5g20830) (EC 2.4.1.13) SUS1 / P49040: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana P49040: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana	24% id, 19% cov
SUS2_HORVU / P31923: Sucrose synthase 2; Sucrose-UDP glucosyltransferase 2; EC 2.4.1.13 from Hordeum vulgare CAA49551.1: Sucrose synthase 2 (EC 2.4.1.13)	28% id, 15% cov
BAC91548.1: sucrose synthase (SusA;SpsA;Gv-SuS;gvip490;gll3607) (EC 2.4.1.13)	27% id, 15% cov
SUS_MELRP / I7A3T6: Sucrose synthase; SuSyMr; EC 2.4.1.13 from Melioribacter roseus AFN74551.1: sucrose synthase (SuSyMr;MROS_1314) (EC 2.4.1.13) I7A3T6: sucrose synthase (EC 2.4.1.13) from Melioribacter roseus	37% id, 10% cov
BAB20799.1: sucrose synthase 1 (Sus1;PypSUS1) (EC 2.4.1.13)	29% id, 12% cov
AAF85966.1: sucrose synthase-2 (Susy2) (EC 2.4.1.13)	32% id, 11% cov
SUS_NITEU / Q820M5: Sucrose synthase; SuSyNe; EC 2.4.1.13 from Nitrosomonas europaea CAD85125.1: sucrose synthase (Ss2;SuSyNe;NE1214) (EC 2.4.1.13) Q820M5: sucrose synthase (EC 2.4.1.13) from Nitrosomonas europaea	37% id, 9% cov
SUS_DENA2 / D4H6M0: Sucrose synthase; SuSyDa; EC 2.4.1.13 from Denitrovibrio acetiphilus ADD69694.1: sucrose synthase (SuSyDa;Dacet_2944) (EC 2.4.1.13) D4H6M0: sucrose synthase (EC 2.4.1.13) from Denitrovibrio acetiphilus	39% id, 9% cov
BAB10337.1: At5g49190/K21P3.6 (sucrose synthase;Sus2) (EC 2.4.1.13)	33% id, 10% cov
CAA26229.1: sucrose synthase 1 (SH-1) (EC 2.4.1.13)	30% id, 11% cov
SUS2_ARATH / Q00917: Sucrose synthase 2; AtSUS2; Sucrose-UDP glucosyltransferase 2; EC 2.4.1.13 from Arabidopsis thaliana Q00917: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana	33% id, 10% cov
CAA04512.1: sucrose synthase 2 (Sus2) (EC 2.4.1.13) O24301: sucrose synthase (EC 2.4.1.13) from Pisum sativum	33% id, 10% cov
CAA03935.1: Sucrose synthase type 2 (EC 2.4.1.13)	28% id, 12% cov
AAN76498.1: sucrose synthase (EC 2.4.1.13)	32% id, 10% cov
CAB40794.1: sucrose synthase S1 (MtSucS1;SucS1) (EC 2.4.1.13)	32% id, 10% cov
SUS3_ARATH / Q9M111: Sucrose synthase 3; AtSUS3; Sucrose-UDP glucosyltransferase 3; EC 2.4.1.13 from Arabidopsis thaliana SUS3 / Q9M111: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana Q9M111: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana	31% id, 11% cov
C6H0M2: sucrose synthase (EC 2.4.1.13) from Hordeum vulgare	30% id, 11% cov
SUS4_ORYSJ / Q10LP5: Sucrose synthase 4; OsSUS4; Sucrose-UDP glucosyltransferase 4; EC 2.4.1.13 from Oryza sativa	30% id, 11% cov
AAC17867.1: sucrose synthase (MsSUS1) (EC 2.4.1.13)	31% id, 10% cov
BAA88981.1: sucrose synthase (CitSUSA-2) (EC 2.4.1.13)	30% id, 11% cov
BAA88904.1: sucrose synthase (CitSUSA) (EC 2.4.1.13) Q9SLY2: sucrose synthase (EC 2.4.1.13) from Citrus unshiu	30% id, 11% cov
SUS6_ARATH / Q9FX32: Sucrose synthase 6; AtSUS6; Sucrose-UDP glucosyltransferase 6; EC 2.4.1.13 from Arabidopsis thaliana SUS6 / Q9FX32: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana Q9FX32: sucrose synthase (EC 2.4.1.13) from Arabidopsis thaliana	35% id, 9% cov
CAA09297.1: sucrose synthase II (SS-II;SusA) (EC 2.4.1.13)	26% id, 11% cov
CAB38022.1: sucrose synthase (Ss2) (EC 2.4.1.13)	33% id, 9% cov
BAA08304.1: sucrose-phosphate synthase (Sps1) (EC 2.4.1.13)	25% id, 11% cov
Q84T18: sucrose synthase (EC 2.4.1.13) from Solanum tuberosum	42% id, 6% cov
E0Z1D1: sucrose synthase (EC 2.4.1.13) from Solanum lycopersicum	42% id, 6% cov
BAA88905.1: sucrose synthase (CitSUS1) (EC 2.4.1.13)	42% id, 6% cov
BAA89049.1: sucrose synthase (CitSUS1-2) (EC 2.4.1.13)	42% id, 6% cov
P49037: sucrose synthase (EC 2.4.1.13) from Solanum lycopersicum	40% id, 7% cov
CAD61188.1: sucrose synthase 4 (Sus4) (EC 2.4.1.13) Q7Y078: sucrose synthase (EC 2.4.1.13) from Solanum tuberosum	40% id, 7% cov
AAA33841.1: sucrose synthase (Sus1;SuSy;SS16) (EC 2.4.1.13)	40% id, 7% cov
AAD28641.1: sucrose synthase (EC 2.4.1.13) Q9XGB7: sucrose synthase (EC 2.4.1.13) from Gossypium hirsutum	39% id, 6% cov
AAK65960.1: sucrose synthase (SS1;SBSS1) (EC 2.4.1.13)	39% id, 6% cov
SUS_SOYBN / P13708: Sucrose synthase; Nodulin-100; N-100; Sucrose-UDP glucosyltransferase; EC 2.4.1.13 from Glycine max AAC39323.1: sucrose synthase (SS;GmSS;SUSY;GmSuSy;GmSUS;Nodulin-100) (EC 2.4.1.13) SS / P13708: sucrose synthase (EC 2.4.1.13) from Glycine max P13708: sucrose synthase (EC 2.4.1.13) from Glycine max	41% id, 5% cov
P31926: sucrose synthase (EC 2.4.1.13) from Vicia faba	41% id, 5% cov
More...

HSERO_RS04040: pilus assembly protein is similar to:	PaperBLAST
BAA08304.1: sucrose-phosphate synthase (Sps1) (EC 2.4.1.13)	50% id, 4% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory