Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 120 curated entries in PaperBLAST's database that match '2.4.2.2'.
These curated entries have 82 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS06175: queuine tRNA-ribosyltransferase is similar to: | PaperBLAST |
TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli | 64% id, 98% cov |
Q54177: tRNA-guanosine34 preQ1 transglycosylase (EC 2.4.2.29) from Shigella flexneri | 64% id, 98% cov |
tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile | 57% id, 97% cov |
| HSERO_RS15065: laccase is similar to: | PaperBLAST |
PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli | 56% id, 99% cov |
PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus | 33% id, 92% cov |
PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic | 32% id, 90% cov |
| HSERO_RS09770: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase is similar to: | PaperBLAST |
cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica | 44% id, 88% cov |
cobT / P29935: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Sinorhizobium sp. | 41% id, 96% cov |
cobT / A0A1D9FP51: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Clostridium formicaceticum | 39% id, 96% cov |
| HSERO_RS07175: hypothetical protein is similar to: | PaperBLAST |
PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2 from Escherichia coli | 33% id, 99% cov |
| HSERO_RS21745: 5'-methylthioadenosine nucleosidase is similar to: | PaperBLAST |
Q8YBL1: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28); methylthioadenosine nucleosidase (EC 3.2.2.16) from Brucella melitensis | 31% id, 86% cov |
| HSERO_RS13250: oxygen-insensitive nitroreductase is similar to: | PaperBLAST |
D7GJ95: aerobic 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii | 40% id, 34% cov |
| HSERO_RS23380: orotate phosphoribosyltransferase is similar to: | PaperBLAST |
XPT_BACSU / P42085: Xanthine phosphoribosyltransferase; XPRTase; EC 2.4.2.22 from Bacillus subtilis | 21% id, 63% cov |
| HSERO_RS04285: glycosyl transferase is similar to: | PaperBLAST |
TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens | 30% id, 21% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2215217-2216275 (frame +2) on NC_014323 is similar to: | PaperBLAST |
cobT / P29935: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Sinorhizobium sp. | 40% id, 98% cov |
| 3019712-3020863 (frame -1) on NC_014323 is similar to: | PaperBLAST |
D7GJ95: aerobic 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii | 38% id, 39% cov |
Lawrence Berkeley National Laboratory